Publications

References and Links to Papers

Grimes K*, Jeong H*, Amoah A, Xu N, Niemann J, Raeder B, Hasenfeld P, Stober C, Rausch T, Benito E, Jann J-C, Nowak D, Emini R, Hoenicka M, Liebold A, Ho A, Shui S, Geiger H, Sanders AD#, Korbel JO#, “Cell type-specific consequences of mosaic structural variants in hematopoietic stem and progenitor cells”, Nature Genetics, 2024 [*co-first]

Yi D, Nam J-W#, Jeong H#, “Recent advances in somatic structural variation analysis at tissues and single-cell levels”, Briefings in Bioinformatics, 2023 [#co-corresponding]

Jeong H*, Grimes K*, Rauwolf K, Bruch PM, Rausch T, Hasenfeld P, Garagorri E, Roider T, Sabarinathan R, Porubsky D, Herbst S, Erarslan-Uysal B, Jann J-C, Marschall T, Nowak D, Bourquin J-P, Kulozik A, Dietrich S, Bornhauser B, Sanders AD, Korbel JO, "Functional analysis of structural variants in single cells using Strand-seq", Nature Biotechnology, 2023 [*co-first]

Jung Yeon Kim, Juhyeon Lee, Myeong Hoon Kang, Tran Thi My Trang, Jusung Lee, Heeho Lee, Hyobin Jeong#, and Pyung Ok Lim#, (Accepted for publication: 2022.11.01) “Dynamic Landscape of Long Noncoding RNAs during Leaf Aging in Arabidopsis“, Frontiers in Plant Science, [#: co-corresponding]

Park J-C, Barahona-Torres N, Jang S-Y, Mok K Y, Kim HJ, Han S-H, Cho K-H, Zhou X, Fu AK, Ip N, Seo J, Choi M, Jeong H, Hwang D, Lee D Y, Byun M S, Yi D, Han J W, Mook-Jung I, Hardy J, “Multi-Omics-Based Autophagy-Related Untypical Subtypes in Patients with Cerebral Amyloid Pathology”, Advanced Science, 2022 [co-author]

Kim DK, Jeong H, Bae J, Cha M-Y, Kang M, Shin D, Ha S, Hyeon S J, Kim H, Suh K, Choi M-S, Ryu H, Yu S-W, Kim J-I, Kim Y-S, Lee S-W, and Hwang D, Mook-Jung I, “Aβ-induced mitochondrial dysfunction in neural progenitor controls KDM5A for neuronal differentiation", Experimental & Molecular Medicine, 2022 [co-author]

Sanders AD*, Meiers S*, Ghareghani M*, Porubsky D*, Jeong H, Vliet MA, Rausch T, Richter-Pechańska P, Kunz JB, Jenni S, Raeder B, Kinanen V, Zimmermann J, Benes V, Schrappe M, Mardin BR, Kulozik A, Bornhauser B, Bourquin J-P, Marschall T, Korbel JO, "Single cell tri-channel-processing reveals structural variation landscapes and complex rearrangement processes", Nature Biotechnology, 2020 [co-author]

Park J-C*, Han S-H*, Lee H*, Dr Jeong H*, Byun MS*, Bae J, Kim G, Lee DY, Yi D, Shin SA, Kim TJ, Hwang D, Lee S-W, Mook-Jung I. “Prognostic plasma protein panel for brain Aβ deposition in Alzheimer’s disease”, Progress in Neurobiology, 2019 [*co-first]

Kwon HK*, Jeong H*, Hwang D, Park ZY. “Comparative Proteomic Analysis of Mouse Models of Pathological and Physiological Cardiac Hypertrophy, with Selection of Biomarkers of Pathological Hypertrophy by Integrative Proteogenomics” BBA - Proteins and Proteomics , 2018 [*co-first]

Jeong H*, Tiwari V. “Exploring the complexity of cortical development using single-cell transcriptomics” Mini Review, Fron. Neurosci - Neurogenesis. 2018 Jan 15; [*first]

Lee S*, Jeong H*, Lee S, Lee J, Kim SJ, Park JW, Woo HR, Lim PO, An G, Nam HG, Hwang D. “Molecular bases for differential aging programs between flag and second leaves during grain-filling in rice” Sci Rep. 2017 Aug 18;7(1):8792. doi: 10.1038/s41598-017-07035-9. [*co-first]

Chung CG, Kwon MJ, Jeon KH, Hyeon DY, Han MH, Park JH, Cha IJ, Cho JH, Kim K, Rho S, Kim GR, Jeong H, Lee JW, Kim T, Kim K, Kim KP, Ehlers MD, Hwang D, Lee SB. “Golgi Outpost Synthesis Impaired by Toxic Polyglutamine Proteins Contributes to Dendritic Pathology in Neurons.” Cell Rep. 2017 Jul 11;20(2):356-369. doi: 10.1016/j.celrep.2017.06.059. [co-author]

Cha M-Y*, Kwon Y-W*, Ahn H-S*, Jeong H*, Lee Y Y, Moon M, Baik SH, Kim DK, Song H, Yi E, Hwang D, Kim H-S and Mook-Jung I. “Protein-iPSCs ameliorate cognitive dysfunction and reduce Aβ deposition in a mouse model of Alzheimer’s disease”, Stem Cells Translational Medicine, 2016 [*co-first]

Kang S*, Jeong H*, Baek J-H, Lee S-J, Han S-H, Cho H J, Kim H, Hong HS, Kim YH, Yi E, Seo SW, Na DL, Hwang D, and Mook-Jung I. “PiB-PET imaging-based serum proteome profiles predict Mild Cognitive Impairment and Alzheimer’s disease” Journal of Alzheimer’s disease, 2016 [*co-first]

Devkota S*, Jeong H*, Kim Y, Ali M, Meroni G, Ballabio A, Hwang D and Lee H-W. “Functional characterization of EI24-induced autophagy in the degradation of RING domain E3 ligases” Autophagy, 2016 [*co-first]

Woo HR*, Koo HJ*, Kim JS*, Jeong H*, Yang JO, Lee IH, Jun JH, Chio SH, Park SJ, Kang BS, Kim YW, Phee B, Kim JH, Seo C, Park C, Kim SC, Park S, Lee B, Lee S, Hwang D, Nam HG and Lim PO. “Programming of plant leaf senescence with temporal and inter-organellar coordination of transcriptome in Arabidopsis” Plant Physiology, 2016 March 10. Pii: canres 2611.2014. [*co-first]

Park MC*, Jeong H, Son SH, Kim YH, Han DY, Peter G, Kang T, Kwon NH, Moon HE, Paek SH, Hwang D, Seol HJ, Nam D-H and Kim S. “Novel morphological and genetic analysis of cancer cells in a 3D microenvironment identifies STAT3 as a regulator of tumor permeability barrier function” Cancer Research. 2015 December 16. Pii: canres 2611.2014. [co-author]

Choi Y-M*, Kim H-K*, Shim W, Muhammad A, Kwon J-W, Kwon H-K, Kim HJ, Jeong H. Kim HM, Hwang D, Kim HS and Choi S. “Mechanism of Cisplatin-Induced Cytotoxicity Is Correlated to Impaired Metabolism Due to Mitochondrial ROS Generation.” PLoS One. 2015 August 6;10(8):e0135083. [co-author]

Park J*, Jeong H*, Kang BS, Kim SJ, Park SY, Kang S, Kim HK, Choi JS, Hwang D, Lee TG. “Multi-dimensional TOF-SIMS analysis for effective profiling of disease-related ions from the tissue surface.” Scientific Reports. 2015. [*co-first]

Yang W, Ramachandran A, You S, Jeong H, Morley S, Mulone MD, Logvinenko T, Kim J, Hwang D, Freeman MR, Adam RM. “Integration of proteomic and transcriptomic profiles identifies a novel PDGF-MYC network in human smooth muscle cells.” Cell Commun Signal. 2014 Aug 1;12(1):44. [co-author]

Kook SY*, Jeong H*, Kang MJ, Park R, Shin HJ, Han SH, Son SM, Song H, Baik SH, Moon M, Yi EC, Hwang D, Mook-Jung I. “Crucial role of calbindin-D28k in the pathogenesis of Alzheimer's disease mouse model.” Cell Death Differ. 2014 Oct;21(10):1575-87. [*co-first]

Kwak JW*, Jeong H*, Han SH*, Kim Y, Son SM, Mook-Jung I, Hwang D, Park JW. “Phosphokinase antibody arrays on dendron-coated surface.” PLoS One. 2014 May 6;9(5):e96456. [*co-first]

Kang MJ, Kim C, Jeong H, Cho BK, Ryou AL, Hwang D, Mook-Jung I, Yi EC. “Synapsin-1 and tau reciprocal O-GlcNAcylation and phosphorylation sites in mouse brain synaptosomes.” Exp Mol Med. 2013 Jun 28;45:e29. [co-author]

Im SK, Jeong H, Jeong HW, Kim KT, Hwang D, Ikegami M, Kong YY. “Disruption of sorting nexin 5 causes respiratory failure associated with undifferentiated alveolar epithelial type I cells in mice.” PLoS One. 2013;8(3):e58511. [co-author]